Protein Pattern Find accepts one or more sequences along with a search pattern and returns the number and positions of sites that match the pattern Protein Pattern Find accepts one or more sequences along with a search pattern and returns the number and positions of sites that match the pattern. Use Protein Pattern Find to […]
Codon Plot accepts a DNA sequence and generates a graphical plot consisting of a horizontal bar for each codon Codon Plot accepts a DNA sequence and generates a graphical plot consisting of a horizontal bar for each codon. The length of the bar is proportional to the frequency of the codon in the codon frequency […]
ORF Finder searches for open reading frames (ORFs) in the DNA sequence you enter ORF Finder searches for open reading frames (ORFs) in the DNA sequence you enter. The program returns the range of each ORF, along with its protein translation. Use ORF Finder to search newly sequenced DNA for potential protein encoding segments. ORF […]
Protein Isoelectric Point calculates the theoretical pI (isoelectric point) for the protein sequence you enter Protein Isoelectric Point calculates the theoretical pI (isoelectric point) for the protein sequence you enter. Use Protein Isoelectric Point when you want to know approximately where on a 2-D gel a particular protein will be found. Click to use the […]
Fuzzy Search DNA accepts a DNA sequence along with a query sequence and returns sites that are identical or similar to the query Fuzzy Search DNA accepts a DNA sequence along with a query sequence and returns sites that are identical or similar to the query. You can use this program, for example, to find […]
Translate accepts a DNA sequence and converts it into a protein in the reading frame you specify Translate accepts a DNA sequence and converts it into a protein in the reading frame you specify. Translate supports the entire IUPAC alphabet and several genetic codes. Click to use the tools>>Translate
Reverse Translate accepts a protein sequence as input and uses a codon usage table to generate a DNA sequence representing the most likely non-degenerate coding sequence Reverse Translate accepts a protein sequence as input and uses a codon usage table to generate a DNA sequence representing the most likely non-degenerate coding sequence. A consensus sequence […]
Pairwise Align Protein accepts two protein sequences and determines the optimal global alignment Pairwise Align Protein accepts two protein sequences and determines the optimal global alignment. Use Pairwise Align Protein to look for conserved sequence regions. Click to use the tools>>Pairwise Align Protein
Fuzzy Search Protein accepts a protein sequence along with a query sequence and returns sites that are identical or similar to the query Fuzzy Search Protein accepts a protein sequence along with a query sequence and returns sites that are identical or similar to the query. Click to use the tools>>Fuzzy Search Protein
Ident and Sim accepts a group of aligned sequences (in FASTA or GDE format) and calculates the identity and similarity of each sequence pair Ident and Sim accepts a group of aligned sequences (in FASTA or GDE format) and calculates the identity and similarity of each sequence pair. Identity and similarity values are often used […]
