Protein Stats returns the number of occurrences of each residue in the sequence you enter Protein Stats returns the number of occurrences of each residue in the sequence you enter. Percentage totals are also given for each residue, and for certain groups of residues, allowing you to quickly compare the results obtained for different sequences. […]
Category Archives: tools
DNA Molecular Weight accepts one or more DNA sequences and calculates molecular weight DNA Molecular Weight accepts one or more DNA sequences and calculates molecular weight. Sequences can be treated as double-stranded or single-stranded, and as linear or circular. Single-stranded sequences are assumed to have a 5′ phosphate. Use DNA Molecular Weight when calculating molecule […]
Restriction Summary accepts a DNA sequence and returns the number and positions of commonly used restriction endonuclease cut sites Restriction Summary accepts a DNA sequence and returns the number and positions of commonly used restriction endonuclease cut sites. Use this program if you wish to quickly determine whether or not an enzyme cuts a particular […]
PCR Primer Stats accepts a list of PCR primer sequences and returns a report describing the properties of each primer, including melting temperature, percent GC content, and PCR suitability PCR Primer Stats accepts a list of PCR primer sequences and returns a report describing the properties of each primer, including melting temperature, percent GC content, […]
Protein Pattern Find accepts one or more sequences along with a search pattern and returns the number and positions of sites that match the pattern Protein Pattern Find accepts one or more sequences along with a search pattern and returns the number and positions of sites that match the pattern. Use Protein Pattern Find to […]
Codon Plot accepts a DNA sequence and generates a graphical plot consisting of a horizontal bar for each codon Codon Plot accepts a DNA sequence and generates a graphical plot consisting of a horizontal bar for each codon. The length of the bar is proportional to the frequency of the codon in the codon frequency […]
ORF Finder searches for open reading frames (ORFs) in the DNA sequence you enter ORF Finder searches for open reading frames (ORFs) in the DNA sequence you enter. The program returns the range of each ORF, along with its protein translation. Use ORF Finder to search newly sequenced DNA for potential protein encoding segments. ORF […]
Protein Isoelectric Point calculates the theoretical pI (isoelectric point) for the protein sequence you enter Protein Isoelectric Point calculates the theoretical pI (isoelectric point) for the protein sequence you enter. Use Protein Isoelectric Point when you want to know approximately where on a 2-D gel a particular protein will be found. Click to use the […]
Fuzzy Search DNA accepts a DNA sequence along with a query sequence and returns sites that are identical or similar to the query Fuzzy Search DNA accepts a DNA sequence along with a query sequence and returns sites that are identical or similar to the query. You can use this program, for example, to find […]
Translate accepts a DNA sequence and converts it into a protein in the reading frame you specify Translate accepts a DNA sequence and converts it into a protein in the reading frame you specify. Translate supports the entire IUPAC alphabet and several genetic codes. Click to use the tools>>Translate
